Transcript: ENST00000389484.3 LRP1B-001

Description

low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]

Gene Synonyms

LRP-DIT, LRPDIT

Location

About this transcript

This transcript has 91 exons, is annotated with 413 domains and features, is associated with 922641 variant alleles and maps to 2285 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389484.3	LRP1B-001	16535	4599aa	ENSP00000374135.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2182	Q4ZFV5 Q4ZG53 Q53QM8 Q53QP5 Q53RA0 Q53RG4 Q53RL0 Q53S26 Q53S73 Q53S76 Q53TB8 Q580W7 Q8WY26 Q8WY27 Q9NZR2	NM_018557.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437977.1	LRP1B-003	3810	798aa	ENSP00000415052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WY26	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000434794.1	LRP1B-002	2621	781aa	ENSP00000413239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERG8 Q4ZG53 Q580W7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442974.1	LRP1B-005	839	280aa	ENSP00000393859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000486364.1	LRP1B-004	514	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 91, Coding exons: 91, Transcript length: 16,535 bps, Translation length: 4,599 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZR2

CCDS

This transcript is a member of the Human CCDS set: CCDS2182

Version

ENST00000389484.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254736 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.