Transcript: ENST00000487010.1 COL3A1-002

Description

collagen, type III, alpha 1 [Source:HGNC Symbol;Acc:2201]

Gene Synonyms

EDS4A

Location

About this transcript

This transcript has 3 exons, is associated with 2116 variant alleles and maps to 483 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000304636.3	COL3A1-001	5543	1466aa	ENSP00000304408.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2297	D2JYH5 P02461 Q6LBY7	NM_000090.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000317840.5	COL3A1-201	4581	1163aa	ENSP00000315243.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ENY8 Q6LBY7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450867.1	COL3A1-004	268	90aa	ENSP00000415346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000487010.1	COL3A1-002	2054	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470167.1	COL3A1-003	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467886.1	COL3A1-005	226	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,054 bps,

Version

ENST00000487010.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000313498 (version 1)