Transcript: ENST00000304636.3 COL3A1-001

Description

collagen, type III, alpha 1 [Source:HGNC Symbol;Acc:2201]

Gene Synonyms

EDS4A

Location

About this transcript

This transcript has 51 exons, is annotated with 44 domains and features, is associated with 19486 variant alleles and maps to 1531 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000304636.3	COL3A1-001	5543	1466aa	ENSP00000304408.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2297	D2JYH5 P02461 Q6LBY7	NM_000090.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000317840.5	COL3A1-201	4581	1163aa	ENSP00000315243.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ENY8 Q6LBY7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450867.1	COL3A1-004	268	90aa	ENSP00000415346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000487010.1	COL3A1-002	2054	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470167.1	COL3A1-003	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467886.1	COL3A1-005	226	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 51, Coding exons: 51, Transcript length: 5,543 bps, Translation length: 1,466 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02461

CCDS

This transcript is a member of the Human CCDS set: CCDS2297

Version

ENST00000304636.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255899 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.