Transcript: ENST00000576076.1 SRRM2-009

Description

serine/arginine repetitive matrix 2 [Source:HGNC Symbol;Acc:16639]

Gene Synonyms

300-KD, CWF21, Cwc21, KIAA0324, SRL300, SRM300, SRm300

Location

Chromosome 16: 2,809,934-2,810,847 forward strand.

About this transcript

This transcript has 1 exon, is associated with 650 variant alleles and maps to 113 oligo probes.

Gene

This transcript is a product of gene ENSG00000167978.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301740.8	SRRM2-001	9353	2752aa	ENSP00000301740.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32373	I3L0N7 I3L182 I3L1C0 I3L1I8 I3L4D8 Q9UQ35	NM_016333.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000576924.1	SRRM2-003	3314	1018aa	ENSP00000461181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0N7 I3L182 I3L1C0 I3L1I8 I3L4D8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571378.1	SRRM2-007	2870	895aa	ENSP00000458647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L182 I3L1C0 I3L1I8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000575009.1	SRRM2-006	1146	297aa	ENSP00000458870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L1C0 I3L1I8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000574340.1	SRRM2-012	579	115aa	ENSP00000458230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0N7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576415.1	SRRM2-028	461	94aa	ENSP00000458718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L1C0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000570539.1	SRRM2-032	431	41aa	ENSP00000459157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L1W5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572883.1	SRRM2-020	887	184aa	ENSP00000460642.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573692.1	SRRM2-031	459	78aa	ENSP00000461535.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574593.1	SRRM2-022	1440	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572721.1	SRRM2-021	841	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572278.1	SRRM2-017	711	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000575870.1	SRRM2-029	696	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574866.1	SRRM2-027	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000576674.1	SRRM2-019	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000573583.2	SRRM2-033	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000576894.1	SRRM2-004	2210	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574331.1	SRRM2-010	1759	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576878.1	SRRM2-026	1141	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570971.1	SRRM2-013	1132	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572952.1	SRRM2-018	1118	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573498.1	SRRM2-016	994	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576076.1	SRRM2-009	914	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575701.1	SRRM2-011	860	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573311.1	SRRM2-023	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570705.1	SRRM2-025	675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570655.1	SRRM2-015	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571041.1	SRRM2-024	498	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571372.1	SRRM2-030	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573451.1	SRRM2-014	441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 914 bps,

Version

ENST00000576076.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000436429 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000576076.1 SRRM2-009

Summary