Transcript: ENST00000468343.1 TMC4-005

Description

transmembrane channel-like 4 [Source:HGNC Symbol;Acc:22998]

Location

Chromosome 19: 54,665,074-54,667,213 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1383 variant alleles and maps to 296 oligo probes.

Gene

This transcript is a product of gene ENSG00000167608.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376591.4	TMC4-011	2412	712aa	ENSP00000365776.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46174	C9JFU4 Q7Z404	NM_144686.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000301187.4	TMC4-001	2371	706aa	ENSP00000301187.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12882	C9JFU4 Q7Z404	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000416963.1	TMC4-201	1081	294aa	ENSP00000405023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z404	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000446291.1	TMC4-002	757	175aa	ENSP00000416444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JFU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449860.1	TMC4-007	505	55aa	ENSP00000392774.1	Nonsense mediated decay		H7C039	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476013.2	TMC4-004	647	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479750.1	TMC4-003	536	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468343.1	TMC4-005	1878	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465790.1	TMC4-010	1559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497518.1	TMC4-008	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494594.1	TMC4-009	449	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495398.1	TMC4-006	393	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,878 bps,

Version

ENST00000468343.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000142153 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000468343.1 TMC4-005

Summary