Transcript: ENST00000376591.4 TMC4-011

Description

transmembrane channel-like 4 [Source:HGNC Symbol;Acc:22998]

Location

Chromosome 19: 54,663,902-54,676,944 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 16 domains and features, is associated with 8500 variant alleles and maps to 506 oligo probes.

Gene

This transcript is a product of gene ENSG00000167608.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376591.4	TMC4-011	2412	712aa	ENSP00000365776.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46174	C9JFU4 Q7Z404	NM_144686.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301187.4	TMC4-001	2371	706aa	ENSP00000301187.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12882	C9JFU4 Q7Z404	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416963.1	TMC4-201	1081	294aa	ENSP00000405023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z404	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446291.1	TMC4-002	757	175aa	ENSP00000416444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JFU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449860.1	TMC4-007	505	55aa	ENSP00000392774.1	Nonsense mediated decay		H7C039	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476013.2	TMC4-004	647	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479750.1	TMC4-003	536	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468343.1	TMC4-005	1878	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465790.1	TMC4-010	1559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497518.1	TMC4-008	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494594.1	TMC4-009	449	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495398.1	TMC4-006	393	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,412 bps, Translation length: 712 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z404

CCDS

This transcript is a member of the Human CCDS set: CCDS46174

Version

ENST00000376591.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000156164 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000376591.4 TMC4-011

Summary