Transcript: ENST00000555632.1 GABRB3-012

Description

gamma-aminobutyric acid (GABA) A receptor, beta 3 [Source:HGNC Symbol;Acc:4083]

Gene Synonyms

ECA5

Location

Chromosome 15: 26,792,403-27,018,161 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 6 domains and features, is associated with 102797 variant alleles and maps to 422 oligo probes.

Gene

This transcript is a product of gene ENSG00000166206.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541819.2	GABRB3-003	5934	529aa	ENSP00000442408.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7N0 G3V5B4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000311550.5	GABRB3-002	5781	473aa	ENSP00000308725.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10019	G3V5B4 P28472	NM_001278631.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299267.4	GABRB3-001	3107	473aa	ENSP00000299267.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10018	G3V5B4 P28472	NM_021912.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400188.3	GABRB3-006	1900	402aa	ENSP00000383049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53921	G3V5B4 P28472	NM_001191321.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545868.1	GABRB3-004	1494	388aa	ENSP00000439169.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53920	G3V5B4 P28472	NM_001191320.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555094.1	GABRB3-011	515	138aa	ENSP00000452272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5B4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000555632.1	GABRB3-012	2107	87aa	ENSP00000452041.1	Nonsense mediated decay		G3V4W7	-	-
ENST00000556166.1	GABRB3-005	1583	81aa	ENSP00000451430.1	Nonsense mediated decay		G3V3U3	-	-
ENST00000554556.1	GABRB3-009	817	105aa	ENSP00000451077.1	Nonsense mediated decay		G3V373	-	-
ENST00000556636.1	GABRB3-013	501	44aa	ENSP00000452159.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557641.1	GABRB3-010	828	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554722.1	GABRB3-008	406	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557765.1	GABRB3-014	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 4, Transcript length: 2,107 bps, Translation length: 87 residues

Version

ENST00000555632.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415131 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000555632.1 GABRB3-012

Summary