Transcript: ENST00000298537.7 SDCCAG3-001

Description

serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]

Gene Synonyms

NY-CO-3

Location

Chromosome 9: 139,296,377-139,305,061 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 6061 variant alleles and maps to 461 oligo probes.

Gene

This transcript is a product of gene ENSG00000165689.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298537.7	SDCCAG3-001	2314	412aa	ENSP00000298537.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6999	Q96C92	NM_006643.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357365.3	SDCCAG3-002	2301	435aa	ENSP00000349929.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43904	Q96C92	NM_001039707.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371725.3	SDCCAG3-003	2129	362aa	ENSP00000360790.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43903	Q96C92	NM_001039708.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371723.4	SDCCAG3-004	865	223aa	ENSP00000360788.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417512.1	SDCCAG3-007	626	167aa	ENSP00000409255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000446833.1	SDCCAG3-006	459	108aa	ENSP00000409357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MDD7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000461693.1	SDCCAG3-011	869	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468963.1	SDCCAG3-009	686	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486441.1	SDCCAG3-008	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466579.1	SDCCAG3-010	496	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481114.1	SDCCAG3-012	340	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,314 bps, Translation length: 412 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96C92

CCDS

This transcript is a member of the Human CCDS set: CCDS6999

Version

ENST00000298537.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000055059 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000298537.7 SDCCAG3-001

Summary