Transcript: ENST00000553962.1 EML5-007

Description

echinoderm microtubule associated protein like 5 [Source:HGNC Symbol;Acc:18197]

Gene Synonyms

EMAP-2, HuEMAP-2

Location

Chromosome 14: 89,094,092-89,111,081 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 6494 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSG00000165521.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000554922.1	EML5-001	9570	1977aa	ENSP00000451998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45148	Q05BV3	NM_183387.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352093.5	EML5-201	7033	1931aa	ENSP00000298315.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNC1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380664.5	EML5-010	5910	1969aa	ENSP00000370039.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q05BV3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555823.1	EML5-008	770	256aa	ENSP00000452030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJS1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000553281.1	EML5-004	3925	205aa	ENSP00000452360.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553526.1	EML5-005	3600	60aa	ENSP00000450965.1	Nonsense mediated decay		H0YJ79	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553320.1	EML5-009	354	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553973.1	EML5-006	3556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553962.1	EML5-007	627	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 627 bps,

Version

ENST00000553962.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410495 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000553962.1 EML5-007

Summary