Transcript: ENST00000379361.4 PTCHD1-002

Description

patched domain containing 1 [Source:HGNC Symbol;Acc:26392]

Gene Synonyms

FLJ30296

Location

About this transcript

This transcript has 3 exons, is annotated with 23 domains and features, is associated with 25059 variant alleles and maps to 486 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379361.4	PTCHD1-002	13714	888aa	ENSP00000368666.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35215	Q96NR3	NM_173495.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456522.1	PTCHD1-001	736	103aa	ENSP00000406663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 13,714 bps, Translation length: 888 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96NR3

CCDS

This transcript is a member of the Human CCDS set: CCDS35215

Version

ENST00000379361.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000056047 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.