Transcript: ENST00000467062.1 SNAPC3-001

Description

small nuclear RNA activating complex, polypeptide 3, 50kDa [Source:HGNC Symbol;Acc:11136]

Gene Synonyms

MGC132011, MGC33124, PTFbeta, SNAP50

Location

About this transcript

This transcript has 12 exons, is annotated with 3 domains and features, is associated with 24966 variant alleles and maps to 656 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380821.3	SNAPC3-002	5680	411aa	ENSP00000370200.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6478	Q5T284 Q92966	NM_001039697.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380799.1	SNAPC3-005	753	124aa	ENSP00000370177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T284	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421710.1	SNAPC3-006	730	243aa	ENSP00000391832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T282	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000467062.1	SNAPC3-001	2574	411aa	ENSP00000436699.1	Nonsense mediated decay	CCDS6478	Q5T284 Q92966	-	-
ENST00000490969.1	SNAPC3-003	2524	411aa	ENSP00000432393.1	Nonsense mediated decay	CCDS6478	Q5T284 Q92966	-	-
ENST00000461041.1	SNAPC3-004	403	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 9, Transcript length: 2,574 bps, Translation length: 411 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92966

CCDS

This transcript is a member of the Human CCDS set: CCDS6478

Version

ENST00000467062.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000051762 (version 3)