Transcript: ENST00000367480.3 STXBP5-003

Description

syntaxin binding protein 5 (tomosyn) [Source:HGNC Symbol;Acc:19665]

Gene Synonyms

LGL3, LLGL3, Nbla04300, tomosyn

Location

Chromosome 6: 147,525,669-147,705,891 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 37 domains and features, is associated with 76437 variant alleles and maps to 697 oligo probes.

Gene

This transcript is a product of gene ENSG00000164506.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367481.3	STXBP5-001	4431	1115aa	ENSP00000356451.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5211	Q3LIE1 Q5T5C0	NM_139244.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000179882.6	STXBP5-201	3940	806aa	ENSP00000179882.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXC4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000321680.6	STXBP5-002	3456	1151aa	ENSP00000321826.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47499	Q5T5C0	NM_001127715.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367480.3	STXBP5-003	3297	1098aa	ENSP00000356450.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T5C0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546097.1	STXBP5-202	2160	308aa	ENSP00000441479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3B794	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392291.2	STXBP5-004	791	263aa	ENSP00000376112.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JRH0	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000367475.2	STXBP5-005	521	174aa	ENSP00000356445.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 3,297 bps, Translation length: 1,098 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5T5C0

Version

ENST00000367480.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000042607 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000367480.3 STXBP5-003

Summary