Transcript: ENST00000448238.2 NIPBL-002

Description

Nipped-B homolog (Drosophila) [Source:HGNC Symbol;Acc:28862]

Gene Synonyms

CDLS, CDLS1, DKFZp434L1319, FLJ11203, FLJ12597, FLJ13354, FLJ13648, IDN3, IDN3-B, Scc2

Location

Chromosome 5: 36,876,892-37,064,292 forward strand.

About this transcript

This transcript has 46 exons, is annotated with 28 domains and features, is associated with 82870 variant alleles and maps to 1126 oligo probes.

Gene

This transcript is a product of gene ENSG00000164190.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282516.8	NIPBL-001	10435	2804aa	ENSP00000282516.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3920	A2RRA7 Q6KC79	NM_133433.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448238.2	NIPBL-002	8729	2697aa	ENSP00000406266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47198	Q6KC79	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513819.1	NIPBL-008	452	150aa	ENSP00000421504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8M3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000504430.1	NIPBL-004	3455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505998.1	NIPBL-003	969	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503274.1	NIPBL-007	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509429.1	NIPBL-006	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514335.1	NIPBL-005	2948	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 46, Coding exons: 45, Transcript length: 8,729 bps, Translation length: 2,697 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6KC79

CCDS

This transcript is a member of the Human CCDS set: CCDS47198

Version

ENST00000448238.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000366904 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000448238.2 NIPBL-002

Summary