Transcript: ENST00000411767.2 PTPN13-003

Description

protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) [Source:HGNC Symbol;Acc:9646]

Gene Synonyms

FAP-1, PNP1, PTP-BAS, PTP-BL, PTP1E, PTPL1, PTPLE, hPTP1E

Location

Chromosome 4: 87,515,885-87,736,302 forward strand.

About this transcript

This transcript has 48 exons, is annotated with 68 domains and features, is associated with 89599 variant alleles and maps to 1602 oligo probes.

Gene

This transcript is a product of gene ENSG00000163629.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000436978.1	PTPN13-201	8573	2490aa	ENSP00000394794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47093	D6R9X4 Q12923 Q4W5F5	NM_080685.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427191.2	PTPN13-001	8487	2466aa	ENSP00000408368.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47095	D6R9X4 Q12923	NM_006264.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411767.2	PTPN13-003	8119	2485aa	ENSP00000407249.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47094	D6R9X4 Q12923	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511467.1	PTPN13-005	8076	2490aa	ENSP00000426626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47093	D6R9X4 Q12923 Q4W5F5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000316707.6	PTPN13-002	7546	2294aa	ENSP00000322675.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47096	D6R9X4 Q12923	NM_080684.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502971.1	PTPN13-006	1708	227aa	ENSP00000423531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9M4 D6R9X4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507902.1	PTPN13-008	516	139aa	ENSP00000422835.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9X4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511105.1	PTPN13-010	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508063.1	PTPN13-009	457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 48, Coding exons: 47, Transcript length: 8,119 bps, Translation length: 2,485 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12923

CCDS

This transcript is a member of the Human CCDS set: CCDS47094

Version

ENST00000411767.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000363191 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000411767.2 PTPN13-003

Summary