Transcript: ENST00000368072.5 PEX19-001

Description

peroxisomal biogenesis factor 19 [Source:HGNC Symbol;Acc:9713]

Gene Synonyms

D1S2223E, HK33, PBD12A, PMP1, PMPI, PXF, PXMP1

Location

Chromosome 1: 160,246,602-160,254,936 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 5 domains and features, is associated with 3922 variant alleles and maps to 694 oligo probes.

Gene

This transcript is a product of gene ENSG00000162735.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368072.5	PEX19-001	3661	299aa	ENSP00000357051.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1201	B7Z6I5 P40855	NM_002857.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440949.3	PEX19-201	1972	209aa	ENSP00000396784.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z6I5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392220.2	PEX19-003	796	235aa	ENSP00000376054.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5QNY5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000495624.1	PEX19-005	734	119aa	ENSP00000434567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472750.1	PEX19-002	3504	40aa	ENSP00000434633.1	Nonsense mediated decay		E9PPB4	-	-
ENST00000462644.1	PEX19-004	904	166aa	ENSP00000435896.1	Nonsense mediated decay		E9PS71	-	-
ENST00000532643.1	PEX19-008	894	186aa	ENSP00000435915.1	Nonsense mediated decay		B7Z8B3	-	-
ENST00000532508.1	PEX19-014	1237	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533699.1	PEX19-010	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533104.1	PEX19-012	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467711.1	PEX19-006	205	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532516.1	PEX19-016	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524939.1	PEX19-011	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 3,661 bps, Translation length: 299 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P40855

CCDS

This transcript is a member of the Human CCDS set: CCDS1201

Version

ENST00000368072.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000080642 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000368072.5 PEX19-001

Summary