Transcript: ENST00000339394.6 SDC3-002

Description

syndecan 3 [Source:HGNC Symbol;Acc:10660]

Gene Synonyms

KIAA0468, N-syndecan, SDCN, SYND3

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 17000 variant alleles and maps to 233 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336798.7	SDC3-001	6392	384aa	ENSP00000338346.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DPN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339394.6	SDC3-002	1580	442aa	ENSP00000344468.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30661	O75056	NM_014654.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471567.1	SDC3-003	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487984.1	SDC3-004	355	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,580 bps, Translation length: 442 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75056

CCDS

This transcript is a member of the Human CCDS set: CCDS30661

Version

ENST00000339394.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000102017 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.