Transcript: ENST00000473628.1 COL26A1-003

Description

collagen, type XXVI, alpha 1 [Source:HGNC Symbol;Acc:18038]

Gene Synonyms

EMI6, EMID2, EMU2, Emu2, SH2B

Location

About this transcript

This transcript has 3 exons, is associated with 2344 variant alleles and maps to 165 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313669.7	COL26A1-201	3007	440aa	ENSP00000318234.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPW4	NM_133457.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397927.3	COL26A1-002	3032	441aa	ENSP00000381022.3	Pseudogene owing to a SNP/indel but in other individuals/haplotypes/strains the gene is translated.Polymorphic pseudogene	CCDS64739	Q96A83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528707.1	COL26A1-001	2969	439aa	ENSP00000434167.1	Pseudogene owing to a SNP/indel but in other individuals/haplotypes/strains the gene is translated.Polymorphic pseudogene		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473628.1	COL26A1-003	522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 522 bps,

Version

ENST00000473628.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347574 (version 1)