Transcript: ENST00000300305.3 RUNX1-002

Description

runt-related transcription factor 1 [Source:HGNC Symbol;Acc:10471]

Gene Synonyms

AML1, AML1-EVI-1, AMLCR1, CBFA2, EVI-1, PEBP2A2, PEBP2aB

Location

Chromosome 21: 36,160,098-36,421,641 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 21 domains and features, is associated with 113566 variant alleles and maps to 921 oligo probes.

Gene

This transcript is a product of gene ENSG00000159216.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300305.3	RUNX1-002	6222	480aa	ENSP00000300305.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13639	Q01196	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000344691.4	RUNX1-001	7274	453aa	ENSP00000340690.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42922	Q01196	NM_001001890.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000437180.1	RUNX1-202	5967	480aa	ENSP00000409227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13639	Q01196	NM_001754.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000325074.5	RUNX1-201	5741	468aa	ENSP00000319459.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MZI9 Q01196	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000358356.5	RUNX1-005	2720	250aa	ENSP00000351123.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46646	Q01196	NM_001122607.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000399240.1	RUNX1-009	1590	389aa	ENSP00000382184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KVB1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000475045.2	RUNX1-013	1582	49aa	ENSP00000477072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000399237.2	RUNX1-012	822	256aa	ENSP00000382182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MZI9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000486278.2	RUNX1-203	792	191aa	ENSP00000438019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H139	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000455571.1	RUNX1-010	610	140aa	ENSP00000388189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWM1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000416754.1	RUNX1-004	346	32aa	ENSP00000405158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q01196	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482318.1	RUNX1-003	1710	38aa	ENSP00000477067.1	Nonsense mediated decay		-	-	-
ENST00000494829.1	RUNX1-015	3622	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460207.1	RUNX1-017	603	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479325.1	RUNX1-006	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467692.1	RUNX1-016	453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467577.1	RUNX1-008	264	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468726.1	RUNX1-014	251	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469087.1	RUNX1-007	1790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 6,222 bps, Translation length: 480 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01196

CCDS

This transcript is a member of the Human CCDS set: CCDS13639

Version

ENST00000300305.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000194231 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000300305.3 RUNX1-002

Summary