Transcript: ENST00000288774.3 PEX10-001

Description

peroxisomal biogenesis factor 10 [Source:HGNC Symbol;Acc:8851]

Gene Synonyms

NALD, PBD6A, PBD6B, RNF69

Location

Chromosome 1: 2,336,236-2,343,969 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 14 domains and features, is associated with 4516 variant alleles and maps to 419 oligo probes.

Gene

This transcript is a product of gene ENSG00000157911.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000288774.3	PEX10-001	2038	346aa	ENSP00000288774.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41	J3QRM4 O60683	NM_153818.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000447513.2	PEX10-002	1997	326aa	ENSP00000407922.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44045	J3QRM4 O60683	NM_002617.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000507596.1	PEX10-003	1941	324aa	ENSP00000424291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBB0 J3QRM4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000508384.1	PEX10-004	611	30aa	ENSP00000464289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRM4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510434.1	PEX10-005	907	209aa	ENSP00000423051.1	Nonsense mediated decay		D6RA89 J3QRM4	-	-
ENST00000502666.1	PEX10-008	653	25aa	ENSP00000461951.1	Nonsense mediated decay		J3KRE0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514502.1	PEX10-006	548	73aa	ENSP00000425924.1	Nonsense mediated decay		D6RIF5 J3KRE0	-	-
ENST00000515760.1	PEX10-009	603	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504111.1	PEX10-007	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,038 bps, Translation length: 346 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60683

CCDS

This transcript is a member of the Human CCDS set: CCDS41

Version

ENST00000288774.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000004638 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000288774.3 PEX10-001

Summary