Transcript: ENST00000399820.3 WDR19-001

Description

WD repeat domain 19 [Source:HGNC Symbol;Acc:18340]

Gene Synonyms

ATD5, CED4, DYF-2, FLJ23127, IFT144, KIAA1638, NPHP13, ORF26, Oseg6, PWDMP, Pwdmp

Location

Chromosome 4: 39,184,024-39,287,430 forward strand.

About this transcript

This transcript has 37 exons, is annotated with 18 domains and features, is associated with 41699 variant alleles and maps to 1017 oligo probes.

Gene

This transcript is a product of gene ENSG00000157796.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399820.3	WDR19-001	4520	1342aa	ENSP00000382717.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47042	B4DGR6 D6RE75 Q8NEZ3	NM_025132.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000288634.7	WDR19-201	4249	1182aa	ENSP00000288634.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DGR6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506503.1	WDR19-006	2513	481aa	ENSP00000423491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9P6 D6RE75	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509560.1	WDR19-010	540	142aa	ENSP00000426918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE75	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512112.1	WDR19-011	429	42aa	ENSP00000421888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAI4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506869.1	WDR19-003	4249	100aa	ENSP00000424319.1	Nonsense mediated decay		D6RBA0	-	-
ENST00000503697.1	WDR19-002	862	99aa	ENSP00000423706.1	Nonsense mediated decay		D6RCF7	-	-
ENST00000505055.1	WDR19-012	573	78aa	ENSP00000425949.1	Nonsense mediated decay		D6RIE4	-	-
ENST00000507228.1	WDR19-015	571	135aa	ENSP00000421401.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515631.1	WDR19-016	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511729.1	WDR19-009	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502718.1	WDR19-020	424	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512095.1	WDR19-007	3095	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512534.1	WDR19-008	2676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512448.1	WDR19-014	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503733.1	WDR19-018	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512588.1	WDR19-019	708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502389.1	WDR19-013	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510315.1	WDR19-017	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 37, Coding exons: 36, Transcript length: 4,520 bps, Translation length: 1,342 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NEZ3

CCDS

This transcript is a member of the Human CCDS set: CCDS47042

Version

ENST00000399820.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000360689 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000399820.3 WDR19-001

Summary