Transcript: ENST00000288439.5 SLC38A10-002

Description

solute carrier family 38, member 10 [Source:HGNC Symbol;Acc:28237]

Gene Synonyms

MGC15523, PP1744

Location

Chromosome 17: 79,224,996-79,269,067 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 18 domains and features, is associated with 21538 variant alleles and maps to 474 oligo probes.

Gene

This transcript is a product of gene ENSG00000157637.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374759.3	SLC38A10-001	4300	1119aa	ENSP00000363891.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42397	F5H3T4 Q9HBR0	NM_001037984.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000288439.5	SLC38A10-002	2708	780aa	ENSP00000288439.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11780	F5H3T4 Q9HBR0	NM_138570.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540966.1	SLC38A10-010	896	298aa	ENSP00000437601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YF92	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000576151.1	SLC38A10-012	774	258aa	ENSP00000458273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000543204.1	SLC38A10-008	663	70aa	ENSP00000444523.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000539748.1	SLC38A10-006	528	119aa	ENSP00000439115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3T4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546352.1	SLC38A10-009	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000540233.1	SLC38A10-007	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542075.1	SLC38A10-003	2903	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000539643.1	SLC38A10-004	1988	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573058.1	SLC38A10-011	1627	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,708 bps, Translation length: 780 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HBR0

CCDS

This transcript is a member of the Human CCDS set: CCDS11780

Version

ENST00000288439.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000397751 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000288439.5 SLC38A10-002

Summary