Transcript: ENST00000477024.1 CACNA2D3-004

Description

calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:15460]

Gene Synonyms

HSA272268

Location

Chromosome 3: 54,157,506-54,922,051 forward strand.

About this transcript

This transcript has 22 exons, is annotated with 12 domains and features, is associated with 362606 variant alleles and maps to 448 oligo probes.

Gene

This transcript is a product of gene ENSG00000157445.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000474759.1	CACNA2D3-001	3675	1091aa	ENSP00000419101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54598	C9JAV5 Q8IZS8	NM_018398.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000288197.5	CACNA2D3-201	3671	1091aa	ENSP00000288197.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAV5 Q8IZS8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415676.2	CACNA2D3-202	3661	1091aa	ENSP00000389506.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAV5 Q8IZS8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490478.1	CACNA2D3-002	3557	997aa	ENSP00000417279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAV5 Q8IZS8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492460.1	CACNA2D3-006	559	126aa	ENSP00000418028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAV5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471363.1	CACNA2D3-003	3477	519aa	ENSP00000418228.1	Nonsense mediated decay		C9JAV5 Q8IZS8	-	-
ENST00000477024.1	CACNA2D3-004	1972	525aa	ENSP00000417318.1	Nonsense mediated decay		B4DSF6 C9JAV5	-	-
ENST00000468658.1	CACNA2D3-005	1826	46aa	ENSP00000417455.1	Nonsense mediated decay		F8WAV4	-	-
ENST00000478261.1	CACNA2D3-009	760	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478466.1	CACNA2D3-007	495	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471865.1	CACNA2D3-008	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 19, Transcript length: 1,972 bps, Translation length: 525 residues

Version

ENST00000477024.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000351405 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000477024.1 CACNA2D3-004

Summary