Transcript: ENST00000422281.2 CACNA1D-002

Description

calcium channel, voltage-dependent, L type, alpha 1D subunit [Source:HGNC Symbol;Acc:1391]

Gene Synonyms

CACH3, CACN4, CACNL1A2, CCHL1A2, Cav1.3, PASNA, SANDD

Location

Chromosome 3: 53,529,194-53,845,433 forward strand.

About this transcript

This transcript has 46 exons, is annotated with 73 domains and features, is associated with 133495 variant alleles and maps to 1164 oligo probes.

Gene

This transcript is a product of gene ENSG00000157388.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000288139.4	CACNA1D-001	8991	2181aa	ENSP00000288139.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2872	Q01668	NM_000720.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350061.5	CACNA1D-003	7636	2161aa	ENSP00000288133.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46848	Q01668	NM_001128840.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422281.2	CACNA1D-002	6414	2137aa	ENSP00000409174.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46849	Q01668	NM_001128839.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481478.1	CACNA1D-004	5667	1854aa	ENSP00000418014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q59GD8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540742.1	CACNA1D-201	1830	539aa	ENSP00000438229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H313	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544977.1	CACNA1D-202	1749	351aa	ENSP00000440956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z269	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481085.1	CACNA1D-007	791	264aa	ENSP00000418045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000498251.1	CACNA1D-005	836	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464429.1	CACNA1D-006	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 46, Coding exons: 46, Transcript length: 6,414 bps, Translation length: 2,137 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01668

CCDS

This transcript is a member of the Human CCDS set: CCDS46849

Version

ENST00000422281.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000350556 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000422281.2 CACNA1D-002

Summary