Transcript: ENST00000492095.1 NECAP2-002

Description

NECAP endocytosis associated 2 [Source:HGNC Symbol;Acc:25528]

Gene Synonyms

FLJ10420

Location

Chromosome 1: 16,767,238-16,786,572 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 8773 variant alleles and maps to 443 oligo probes.

Gene

This transcript is a product of gene ENSG00000157191.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337132.5	NECAP2-001	2070	263aa	ENSP00000338746.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS173	Q9NVZ3	NM_018090.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443980.2	NECAP2-008	1929	273aa	ENSP00000391942.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44066	Q9NVZ3	NM_001145277.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000406746.1	NECAP2-201	1291	263aa	ENSP00000383925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS173	Q9NVZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457722.2	NECAP2-007	935	237aa	ENSP00000407091.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44067	Q9NVZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504551.2	NECAP2-012	768	202aa	ENSP00000424509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB24	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492095.1	NECAP2-002	1787	263aa	ENSP00000427620.1	Nonsense mediated decay	CCDS173	Q9NVZ3	-	-
ENST00000459640.1	NECAP2-005	981	194aa	ENSP00000421335.1	Nonsense mediated decay		F6SKB8	-	-
ENST00000504858.1	NECAP2-013	727	101aa	ENSP00000421867.1	Nonsense mediated decay		D6RAN6	-	-
ENST00000513161.1	NECAP2-011	713	63aa	ENSP00000423213.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486390.1	NECAP2-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508680.1	NECAP2-009	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496239.1	NECAP2-003	4619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509727.1	NECAP2-010	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,787 bps, Translation length: 263 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NVZ3

CCDS

This transcript is a member of the Human CCDS set: CCDS173

Version

ENST00000492095.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006681 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000492095.1 NECAP2-002

Summary