Transcript: ENST00000425938.1 SLC6A1-002

Description

solute carrier family 6 (neurotransmitter transporter), member 1 [Source:HGNC Symbol;Acc:11042]

Gene Synonyms

GABATHG, GABATR, GABT1, GAT1

Location

About this transcript

This transcript has 3 exons, is associated with 10511 variant alleles and maps to 170 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287766.4	SLC6A1-001	4502	599aa	ENSP00000287766.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2603	B7Z3C5 C9J5P8 P30531	NM_003042.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536032.1	SLC6A1-201	1756	421aa	ENSP00000445171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z3C5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425938.1	SLC6A1-002	472	38aa	ENSP00000411689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5P8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462473.1	SLC6A1-003	493	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460480.1	SLC6A1-004	457	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495636.1	SLC6A1-005	1088	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 472 bps, Translation length: 38 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000425938.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000340200 (version 1)