Transcript: ENST00000287766.4 SLC6A1-001

Description

solute carrier family 6 (neurotransmitter transporter), member 1 [Source:HGNC Symbol;Acc:11042]

Gene Synonyms

GABATHG, GABATR, GABT1, GAT1

Location

About this transcript

This transcript has 16 exons, is annotated with 32 domains and features, is associated with 21256 variant alleles and maps to 677 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287766.4	SLC6A1-001	4502	599aa	ENSP00000287766.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2603	B7Z3C5 C9J5P8 P30531	NM_003042.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536032.1	SLC6A1-201	1756	421aa	ENSP00000445171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z3C5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425938.1	SLC6A1-002	472	38aa	ENSP00000411689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5P8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462473.1	SLC6A1-003	493	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460480.1	SLC6A1-004	457	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495636.1	SLC6A1-005	1088	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 14, Transcript length: 4,502 bps, Translation length: 599 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P30531

CCDS

This transcript is a member of the Human CCDS set: CCDS2603

Version

ENST00000287766.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000102767 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.