Transcript: ENST00000321453.7 PDE1C-002

Description

phosphodiesterase 1C, calmodulin-dependent 70kDa [Source:HGNC Symbol;Acc:8776]

Gene Synonyms

Hcam3

Location

Chromosome 7: 31,792,690-32,111,048 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 20 domains and features, is associated with 138844 variant alleles and maps to 539 oligo probes.

Gene

This transcript is a product of gene ENSG00000154678.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396184.3	PDE1C-003	8852	634aa	ENSP00000379487.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5437	F8W905 Q14123 Q75MP2 Q75MW3	NM_005020.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396193.1	PDE1C-001	5109	769aa	ENSP00000379496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55100	-	NM_001191058.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396191.1	PDE1C-006	2952	709aa	ENSP00000379494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55099	F8W905 Q14123 Q75MW3	NM_001191057.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000321453.7	PDE1C-002	2898	709aa	ENSP00000318105.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55099	F8W905 Q14123 Q75MW3	NM_001191059.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396182.2	PDE1C-007	2420	634aa	ENSP00000379485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5437	F8W905 Q14123 Q75MP2 Q75MW3	NM_001191056.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396189.2	PDE1C-004	605	46aa	ENSP00000379492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W905 Q75MW3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479980.1	PDE1C-010	787	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464881.1	PDE1C-011	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495221.1	PDE1C-005	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482681.1	PDE1C-008	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478736.1	PDE1C-009	495	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 18, Transcript length: 2,898 bps, Translation length: 709 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14123

CCDS

This transcript is a member of the Human CCDS set: CCDS55099

Version

ENST00000321453.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000215076 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000321453.7 PDE1C-002

Summary