Transcript: ENST00000424927.1 C10orf90-004

Description

chromosome 10 open reading frame 90 [Source:HGNC Symbol;Acc:26563]

Gene Synonyms

FATS, FLJ32938, bA422P15.2

Location

Chromosome 10: 128,113,566-128,192,687 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 34902 variant alleles and maps to 313 oligo probes.

Gene

This transcript is a product of gene ENSG00000154493.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284694.7	C10orf90-201	3076	699aa	ENSP00000284694.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31310	Q5T025 Q96M02 S4R3N7	NM_001004298.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356858.3	C10orf90-001	2995	660aa	ENSP00000349318.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454341.1	C10orf90-203	2785	602aa	ENSP00000398786.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96M02 S4R3N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544758.1	C10orf90-204	2720	796aa	ENSP00000444369.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZL2 Q5T025 S4R3N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432642.1	C10orf90-003	2107	662aa	ENSP00000405995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3N7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000424927.1	C10orf90-004	1595	242aa	ENSP00000411609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000392694.1	C10orf90-202	1414	383aa	ENSP00000376459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T024 S4R3N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488181.1	C10orf90-007	1025	209aa	ENSP00000474558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3N7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000480379.1	C10orf90-005	1012	103aa	ENSP00000474753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96M02	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463082.1	C10orf90-006	566	39aa	ENSP00000474615.1	Nonsense mediated decay		S4R3Q7	-	-
ENST00000368674.1	C10orf90-002	2035	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,595 bps, Translation length: 242 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000424927.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000050972 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000424927.1 C10orf90-004

Summary