Transcript: ENST00000526457.2 LRRK1-005

Description

leucine-rich repeat kinase 1 [Source:HGNC Symbol;Acc:18608]

Gene Synonyms

FLJ23119, KIAA1790, RIPK6, Roco1

Location

Chromosome 15: 101,593,542-101,610,310 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 13 domains and features, is associated with 8891 variant alleles and maps to 357 oligo probes.

Gene

This transcript is a product of gene ENSG00000154237.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284395.5	LRRK1-201	7701	2012aa	ENSP00000284395.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KSX5 J3KN98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388948.3	LRRK1-003	7671	2015aa	ENSP00000373600.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42086	B3KSX5 E9PK39 E9PLF8 E9PMK9 Q38SD2	NM_024652.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532029.2	LRRK1-004	1241	264aa	ENSP00000433268.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLF8 Q38SD2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534045.1	LRRK1-007	569	32aa	ENSP00000435148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525284.1	LRRK1-001	6494	689aa	ENSP00000433069.1	Nonsense mediated decay		E9PK39 E9PLF8 E9PMK9	-	-
ENST00000531270.1	LRRK1-002	6015	650aa	ENSP00000431668.1	Nonsense mediated decay		E9PK39 E9PLF8	-	-
ENST00000526457.2	LRRK1-005	3483	660aa	ENSP00000436672.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000532145.1	LRRK1-006	2790	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525395.2	LRRK1-010	737	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527698.1	LRRK1-008	679	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525617.2	LRRK1-009	614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000538064.1	LRRK1-011	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,483 bps, Translation length: 660 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000526457.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000384571 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000526457.2 LRRK1-005

Summary