Transcript: ENST00000396654.2 AP1S3-007

Description

adaptor-related protein complex 1, sigma 3 subunit [Source:HGNC Symbol;Acc:18971]

Location

Chromosome 2: 224,623,199-224,702,299 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 33634 variant alleles and maps to 274 oligo probes.

Gene

This transcript is a product of gene ENSG00000152056.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396654.2	AP1S3-007	830	154aa	ENSP00000379891.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42827	Q53R44 Q96PC3	NM_001039569.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000443700.1	AP1S3-001	1785	164aa	ENSP00000397155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q53R44 Q53T10 Q96PC3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000396653.2	AP1S3-005	589	63aa	ENSP00000379890.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W8K9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000444408.1	AP1S3-004	561	56aa	ENSP00000399738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZK4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000409375.1	AP1S3-006	552	137aa	ENSP00000387199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZZ1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000446015.2	AP1S3-008	499	154aa	ENSP00000388738.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q53R44 Q96PC3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000423110.1	AP1S3-201	447	104aa	ENSP00000406686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96PC3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415298.1	AP1S3-002	2515	104aa	ENSP00000401705.1	Nonsense mediated decay		Q96PC3	-	-
ENST00000334271.3	AP1S3-003	2201	81aa	ENSP00000333888.3	Nonsense mediated decay		G5E966	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 830 bps, Translation length: 154 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PC3

CCDS

This transcript is a member of the Human CCDS set: CCDS42827

Version

ENST00000396654.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000353158 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000396654.2 AP1S3-007

Summary