Transcript: ENST00000528682.1 CNTN5-006

Description

contactin 5 [Source:HGNC Symbol;Acc:2175]

Gene Synonyms

HNB-2s, NB-2, hNB-2

Location

Chromosome 11: 98,891,920-100,227,297 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 61 domains and features, is associated with 665537 variant alleles and maps to 687 oligo probes.

Gene

This transcript is a product of gene ENSG00000149972.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000524871.1	CNTN5-001	6258	1100aa	ENSP00000435637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53696	B4DGP0 O94779	NM_014361.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527185.1	CNTN5-003	4303	911aa	ENSP00000433575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58168	O94779	NM_001243271.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528682.1	CNTN5-006	3800	1100aa	ENSP00000436185.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53696	B4DGP0 O94779	NM_001243270.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418526.2	CNTN5-004	3679	1026aa	ENSP00000393229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53697	B4DGP0 O94779	NM_175566.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000279463.3	CNTN5-201	3303	1100aa	ENSP00000279463.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53696	B4DGP0 O94779	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530458.1	CNTN5-008	246	59aa	ENSP00000433558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKF9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524560.1	CNTN5-005	1620	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525047.1	CNTN5-007	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525236.1	CNTN5-009	474	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528727.1	CNTN5-002	3144	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527682.1	CNTN5-010	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 3,800 bps, Translation length: 1,100 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94779

CCDS

This transcript is a member of the Human CCDS set: CCDS53696

Version

ENST00000528682.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs12292659, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, ESP6500:European_American, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-CEU, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000395253 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000528682.1 CNTN5-006

Summary