Transcript: ENST00000418526.2 CNTN5-004

Description

contactin 5 [Source:HGNC Symbol;Acc:2175]

Gene Synonyms

HNB-2s, NB-2, hNB-2

Location

Chromosome 11: 99,426,870-100,227,473 forward strand.

About this transcript

This transcript has 22 exons, is annotated with 59 domains and features, is associated with 408504 variant alleles and maps to 613 oligo probes.

Gene

This transcript is a product of gene ENSG00000149972.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000524871.1	CNTN5-001	6258	1100aa	ENSP00000435637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53696	B4DGP0 O94779	NM_014361.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527185.1	CNTN5-003	4303	911aa	ENSP00000433575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58168	O94779	NM_001243271.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528682.1	CNTN5-006	3800	1100aa	ENSP00000436185.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53696	B4DGP0 O94779	NM_001243270.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418526.2	CNTN5-004	3679	1026aa	ENSP00000393229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53697	B4DGP0 O94779	NM_175566.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000279463.3	CNTN5-201	3303	1100aa	ENSP00000279463.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53696	B4DGP0 O94779	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530458.1	CNTN5-008	246	59aa	ENSP00000433558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKF9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524560.1	CNTN5-005	1620	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525047.1	CNTN5-007	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525236.1	CNTN5-009	474	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528727.1	CNTN5-002	3144	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527682.1	CNTN5-010	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 3,679 bps, Translation length: 1,026 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94779

CCDS

This transcript is a member of the Human CCDS set: CCDS53697

Version

ENST00000418526.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000395149 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000418526.2 CNTN5-004

Summary