Transcript: ENST00000276072.3 TAF1-008

Description

TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa [Source:HGNC Symbol;Acc:11535]

Gene Synonyms

BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, N-TAF1, NSCL2, OF, P250, TAF(II)250, TAF2A, TAFII-250, TAFII250, XDP

Location

Chromosome X: 70,586,155-70,683,896 forward strand.

About this transcript

This transcript has 38 exons, is annotated with 50 domains and features, is associated with 33288 variant alleles and maps to 999 oligo probes.

Gene

This transcript is a product of gene ENSG00000147133.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000449580.1	TAF1-202	7708	1906aa	ENSP00000389000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P21675	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423759.1	TAF1-201	7675	1895aa	ENSP00000406549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69783	P21675	NM_001286074.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373790.4	TAF1-009	7629	1872aa	ENSP00000362895.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35325	P21675	NM_138923.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000276072.3	TAF1-008	5692	1893aa	ENSP00000276072.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14412	P21675	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483985.2	TAF1-017	836	279aa	ENSP00000424526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000463163.1	TAF1-007	498	150aa	ENSP00000421611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000437147.3	TAF1-010	2295	490aa	ENSP00000406517.3	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000373775.4	TAF1-014	2199	458aa	ENSP00000362880.4	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461764.1	TAF1-021	1841	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462588.1	TAF1-012	1826	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468167.1	TAF1-011	1767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485087.1	TAF1-013	1738	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497222.1	TAF1-023	1683	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467309.1	TAF1-016	1313	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492404.1	TAF1-015	1249	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482544.1	TAF1-018	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461157.1	TAF1-022	452	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478305.1	TAF1-006	614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483365.1	TAF1-019	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472567.1	TAF1-005	441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474917.1	TAF1-020	326	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 38, Transcript length: 5,692 bps, Translation length: 1,893 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P21675

CCDS

This transcript is a member of the Human CCDS set: CCDS14412

Version

ENST00000276072.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000058996 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000276072.3 TAF1-008

Summary