Transcript: ENST00000335895.8 BTF3-001

Description

basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Gene Synonyms

BETA-NAC, BTF3a, BTF3b, NACB

Location

Chromosome 5: 72,794,233-72,801,320 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 3483 variant alleles and maps to 578 oligo probes.

Gene

This transcript is a product of gene ENSG00000145741.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380591.3	BTF3-002	1237	206aa	ENSP00000369965.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34185	P20290	NM_001037637.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000335895.8	BTF3-001	897	162aa	ENSP00000338516.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4019	P20290	NM_001207.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509708.2	BTF3-006	515	86aa	ENSP00000425490.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507081.2	BTF3-009	379	110aa	ENSP00000420978.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDG3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514505.2	BTF3-010	740	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514360.1	BTF3-008	1177	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508901.1	BTF3-007	954	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512257.1	BTF3-003	887	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510787.1	BTF3-005	610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 897 bps, Translation length: 162 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P20290

CCDS

This transcript is a member of the Human CCDS set: CCDS4019

Version

ENST00000335895.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219815 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000335895.8 BTF3-001

Summary