Transcript: ENST00000287647.3 FANCD2-001

Description

Fanconi anemia, complementation group D2 [Source:HGNC Symbol;Acc:3585]

Gene Synonyms

FA-D2, FA4, FACD, FAD, FAD2, FANCD

Location

Chromosome 3: 10,068,098-10,141,344 forward strand.

About this transcript

This transcript has 43 exons, is annotated with 4 domains and features, is associated with 38545 variant alleles and maps to 1319 oligo probes.

Gene

This transcript is a product of gene ENSG00000144554.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287647.3	FANCD2-001	5219	1471aa	ENSP00000287647.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2595	Q9BXW9	NM_033084.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419585.1	FANCD2-002	5185	1451aa	ENSP00000398754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33696	Q9BXW9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000383807.1	FANCD2-202	5102	1451aa	ENSP00000373318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33696	Q9BXW9	NM_001018115.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000383806.1	FANCD2-201	5008	1249aa	ENSP00000373317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BXW9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431693.1	FANCD2-003	2450	241aa	ENSP00000399354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BXW9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421731.1	FANCD2-004	3425	749aa	ENSP00000389936.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435522.1	FANCD2-005	567	38aa	ENSP00000402166.1	Nonsense mediated decay		F8WE37	-	-
ENST00000438741.1	FANCD2-008	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470757.1	FANCD2-011	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483276.1	FANCD2-006	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470028.1	FANCD2-012	449	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480909.1	FANCD2-010	603	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464934.1	FANCD2-007	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 43, Coding exons: 42, Transcript length: 5,219 bps, Translation length: 1,471 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BXW9

CCDS

This transcript is a member of the Human CCDS set: CCDS2595

Version

ENST00000287647.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250562 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000287647.3 FANCD2-001

Summary