Transcript: ENST00000474426.1 UBR3-004

Description

ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]

Gene Synonyms

DKFZp434P117, FLJ37422, KIAA2024, ZNF650

Location

Chromosome 2: 170,871,313-170,940,641 forward strand.

About this transcript

This transcript has 10 exons, is associated with 27789 variant alleles and maps to 450 oligo probes.

Gene

This transcript is a product of gene ENSG00000144357.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000272793.5	UBR3-001	8005	1888aa	ENSP00000272793.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68DC1 Q6ZT12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418381.1	UBR3-202	7951	1888aa	ENSP00000396068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2238	Q68DC1 Q6ZT12	NM_172070.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392632.2	UBR3-008	5129	950aa	ENSP00000376409.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68DC1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000392631.1	UBR3-201	4414	709aa	ENSP00000376408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZT12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439681.1	UBR3-007	2183	588aa	ENSP00000389097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZD8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000430321.1	UBR3-003	5411	384aa	ENSP00000415982.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000444475.1	UBR3-005	3821	77aa	ENSP00000408436.1	Nonsense mediated decay		F8WEB7	-	-
ENST00000465630.1	UBR3-006	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474426.1	UBR3-004	4066	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484596.1	UBR3-011	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487689.1	UBR3-010	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477461.1	UBR3-009	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 4,066 bps,

Version

ENST00000474426.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323261 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000474426.1 UBR3-004

Summary