Transcript: ENST00000429650.1 SNRNP200-006

Description

small nuclear ribonucleoprotein 200kDa (U5) [Source:HGNC Symbol;Acc:30859]

Gene Synonyms

ASCC3L1, BRR2, HELIC2, KIAA0788, RP33, U5-200KD

Location

Chromosome 2: 96,940,755-96,951,114 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 16 domains and features, is associated with 4880 variant alleles and maps to 744 oligo probes.

Gene

This transcript is a product of gene ENSG00000144028.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000323853.5	SNRNP200-001	7165	2136aa	ENSP00000317123.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2020	A2RRQ7 A4FU77 O75643 Q5ZF01 Q7L5W4 Q9P172	NM_014014.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000349783.5	SNRNP200-201	2673	625aa	ENSP00000326937.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAQ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429650.1	SNRNP200-006	2637	595aa	ENSP00000387870.1	Nonsense mediated decay		B4E0P5	-	-
ENST00000480242.1	SNRNP200-004	3409	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497539.1	SNRNP200-005	2666	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480615.1	SNRNP200-003	1646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493271.1	SNRNP200-007	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484372.1	SNRNP200-008	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480835.1	SNRNP200-009	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 13, Transcript length: 2,637 bps, Translation length: 595 residues

Version

ENST00000429650.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000338882 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000429650.1 SNRNP200-006

Summary