Transcript: ENST00000606170.1 PRDM16-011

Description

PR domain containing 16 [Source:HGNC Symbol;Acc:14000]

Gene Synonyms

CMD1LL, KIAA1675, LVNC8, MEL1, MGC166915, PFM13

Location

Chromosome 1: 3,341,780-3,342,636 forward strand.

About this transcript

This transcript has 2 exons, is associated with 557 variant alleles and maps to 57 oligo probes.

Gene

This transcript is a product of gene ENSG00000142611.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000270722.5	PRDM16-001	8690	1276aa	ENSP00000270722.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41236	Q9HAZ2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000378398.3	PRDM16-201	8721	1276aa	ENSP00000367651.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA13 Q9HAZ2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000441472.2	PRDM16-202	8718	1275aa	ENSP00000407968.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WEV3 H0YA13	NM_022114.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000442529.2	PRDM16-203	8661	1256aa	ENSP00000405253.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YTA5	NM_199454.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000378391.2	PRDM16-003	5447	1257aa	ENSP00000367643.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44048	Q9HAZ2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000511072.1	PRDM16-007	4282	1178aa	ENSP00000426975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDW0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000514189.1	PRDM16-008	4236	1177aa	ENSP00000421400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFY3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000509860.1	PRDM16-002	3737	1084aa	ENSP00000425796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA13	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463591.1	PRDM16-004	384	53aa	ENSP00000476002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQL6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512462.1	PRDM16-009	3723	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000378389.5	PRDM16-005	1142	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000607632.1	PRDM16-010	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000606170.1	PRDM16-011	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 557 bps,

Version

ENST00000606170.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000471224 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000606170.1 PRDM16-011

Summary