Transcript: ENST00000270221.6 EMP3-001

Description

epithelial membrane protein 3 [Source:HGNC Symbol;Acc:3335]

Gene Synonyms

YMP

Location

Chromosome 19: 48,828,582-48,833,810 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 2466 variant alleles and maps to 342 oligo probes.

Gene

This transcript is a product of gene ENSG00000142227.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000270221.6	EMP3-001	876	163aa	ENSP00000270221.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12715	M0QXS0 M0QZ66 M0R1L9 P54852	NM_001425.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000596315.1	EMP3-003	761	94aa	ENSP00000469341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXS0 M0R1L9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599704.1	EMP3-002	753	89aa	ENSP00000470331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ66	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597279.1	EMP3-006	683	163aa	ENSP00000469194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12715	M0QXS0 M0QZ66 M0R1L9 P54852	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593437.1	EMP3-007	502	161aa	ENSP00000469275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXN1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000594198.1	EMP3-004	263	56aa	ENSP00000471964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1L9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000599255.1	EMP3-009	667	63aa	ENSP00000471592.1	Nonsense mediated decay		M0R122	-	-
ENST00000597529.1	EMP3-005	437	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597057.1	EMP3-008	406	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 876 bps, Translation length: 163 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P54852

CCDS

This transcript is a member of the Human CCDS set: CCDS12715

Version

ENST00000270221.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000465613 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000270221.6 EMP3-001

Summary