Transcript: ENST00000580732.2 GREB1L-003

Description

growth regulation by estrogen in breast cancer-like [Source:HGNC Symbol;Acc:31042]

Gene Synonyms

C18orf6, FLJ13687, KIAA1772

Location

Chromosome 18: 18,943,554-19,105,378 forward strand.

About this transcript

This transcript has 33 exons, is annotated with 11 domains and features, is associated with 65942 variant alleles and maps to 746 oligo probes.

Gene

This transcript is a product of gene ENSG00000141449.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000580732.2	GREB1L-003	8749	1923aa	ENSP00000464162.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45836	Q9C091	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424526.1	GREB1L-202	6052	1923aa	ENSP00000412060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45836	Q9C091	NM_001142966.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400483.4	GREB1L-201	5871	742aa	ENSP00000383331.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYW2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000269218.6	GREB1L-010	5600	1814aa	ENSP00000269218.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9C091	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431264.1	GREB1L-203	2515	747aa	ENSP00000393125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9C091	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581327.1	GREB1L-006	682	175aa	ENSP00000463976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR03	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579454.1	GREB1L-005	598	200aa	ENSP00000463926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000580384.1	GREB1L-009	568	190aa	ENSP00000462152.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000578368.1	GREB1L-001	2446	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584446.1	GREB1L-004	3020	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578955.1	GREB1L-007	2882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578383.1	GREB1L-008	605	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580683.1	GREB1L-011	444	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 33, Coding exons: 31, Transcript length: 8,749 bps, Translation length: 1,923 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9C091

CCDS

This transcript is a member of the Human CCDS set: CCDS45836

Version

ENST00000580732.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000443782 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000580732.2 GREB1L-003

Summary