Transcript: ENST00000539698.3 CHST4-002

Description

carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 [Source:HGNC Symbol;Acc:1972]

Gene Synonyms

GST3, GlcNAc6ST2, HEC-GLCNAC-6-ST, HECGLCNAC6ST, LSST

Location

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 3653 variant alleles and maps to 248 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000338482.5	CHST4-001	2412	386aa	ENSP00000341206.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10902	Q8NCG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539698.3	CHST4-002	2183	386aa	ENSP00000441204.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10902	Q8NCG5	NM_001166395.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572450.1	CHST4-201	2122	386aa	ENSP00000461839.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10902	Q8NCG5	NM_005769.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572693.1	CHST4-003	1333	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,183 bps, Translation length: 386 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NCG5

CCDS

This transcript is a member of the Human CCDS set: CCDS10902

Version

ENST00000539698.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000433812 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.