Transcript: ENST00000497206.2 ABCC12-002

Description

ATP-binding cassette, sub-family C (CFTR/MRP), member 12 [Source:HGNC Symbol;Acc:14640]

Gene Synonyms

MRP9

Location

Chromosome 16: 48,117,607-48,180,341 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 28 domains and features, is associated with 25826 variant alleles and maps to 665 oligo probes.

Gene

This transcript is a product of gene ENSG00000140798.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311303.3	ABCC12-001	5168	1359aa	ENSP00000311030.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10730	E9PHY2 Q96J65	NM_033226.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416054.1	ABCC12-201	4053	633aa	ENSP00000413046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHY2 Q96J65	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448542.1	ABCC12-202	3899	935aa	ENSP00000401855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHY2 Q96J65	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527640.1	ABCC12-010	544	106aa	ENSP00000436647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHY2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000529084.1	ABCC12-007	4814	633aa	ENSP00000434510.1	Nonsense mediated decay		E9PHY2 Q96J65	-	-
ENST00000534418.1	ABCC12-003	4379	930aa	ENSP00000431354.1	Nonsense mediated decay		E9PHY2 Q96J65	-	-
ENST00000497206.2	ABCC12-002	4047	1009aa	ENSP00000431232.1	Nonsense mediated decay		E9PHY2 Q96J65	-	-
ENST00000532494.1	ABCC12-005	4033	1009aa	ENSP00000437047.1	Nonsense mediated decay		E9PHY2 Q96J65	-	-
ENST00000529504.1	ABCC12-004	3885	935aa	ENSP00000433333.1	Nonsense mediated decay		E9PHY2 Q96J65	-	-
ENST00000533639.1	ABCC12-008	1224	285aa	ENSP00000435715.1	Nonsense mediated decay		B4DYN2 E9PHY2	-	-
ENST00000532355.1	ABCC12-012	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528693.1	ABCC12-009	2391	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526251.1	ABCC12-006	1229	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533185.1	ABCC12-011	369	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 22, Transcript length: 4,047 bps, Translation length: 1,009 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96J65

Version

ENST00000497206.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs6500304, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-MKK, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000256838 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000497206.2 ABCC12-002

Summary