Transcript: ENST00000393265.2 SLC24A4-003

Description

solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 [Source:HGNC Symbol;Acc:10978]

Gene Synonyms

NCKX4, SHEP6, SLC24A2

Location

Chromosome 14: 92,788,925-92,962,595 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 17 domains and features, is associated with 73501 variant alleles and maps to 533 oligo probes.

Gene

This transcript is a product of gene ENSG00000140090.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000532405.1	SLC24A4-001	4718	622aa	ENSP00000431840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9903	B4DHR5 G3V505 Q8NFF2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531433.1	SLC24A4-002	4531	603aa	ENSP00000433302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45155	G3V505 Q8NFF2	NM_153647.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000298877.1	SLC24A4-201	4465	605aa	ENSP00000298877.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DHR5 G3V505 Q8NFF2	NM_153646.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393265.2	SLC24A4-003	4417	558aa	ENSP00000376948.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45156	B4DHR5 G3V505 Q8NFF2	NM_153648.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000351924.5	SLC24A4-202	4408	586aa	ENSP00000337789.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V505 Q8NFF2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525557.1	SLC24A4-007	4187	464aa	ENSP00000432464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554461.1	SLC24A4-009	334	64aa	ENSP00000452099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V505	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556739.1	SLC24A4-004	3386	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526482.1	SLC24A4-005	4747	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554925.1	SLC24A4-008	1616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 4,417 bps, Translation length: 558 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NFF2

CCDS

This transcript is a member of the Human CCDS set: CCDS45156

Version

ENST00000393265.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000395238 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000393265.2 SLC24A4-003

Summary