Transcript: ENST00000266980.4 SLC39A5-003

Description

solute carrier family 39 (zinc transporter), member 5 [Source:HGNC Symbol;Acc:20502]

Gene Synonyms

LZT-Hs7, ZIP5

Location

Chromosome 12: 56,624,436-56,631,630 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 20 domains and features, is associated with 3859 variant alleles and maps to 463 oligo probes.

Gene

This transcript is a product of gene ENSG00000139540.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000266980.4	SLC39A5-003	2031	540aa	ENSP00000266980.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8912	C9JIB2 C9JPS5 C9JPS6 C9JVC6 Q6ZMH5	NM_001135195.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454355.2	SLC39A5-001	1968	540aa	ENSP00000405360.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8912	C9JIB2 C9JPS5 C9JPS6 C9JVC6 Q6ZMH5	NM_173596.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436633.1	SLC39A5-008	871	239aa	ENSP00000391711.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JB28	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419753.1	SLC39A5-005	613	156aa	ENSP00000402891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIB2 C9JPS5 C9JPS6 C9JVC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437277.1	SLC39A5-009	588	126aa	ENSP00000407399.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIB2 C9JVC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417965.1	SLC39A5-007	569	128aa	ENSP00000414868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIB2 C9JPS6 C9JVC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000424625.1	SLC39A5-006	559	123aa	ENSP00000404155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIB2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419232.1	SLC39A5-011	833	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000447080.1	SLC39A5-010	380	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481103.1	SLC39A5-002	926	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493574.1	SLC39A5-004	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,031 bps, Translation length: 540 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZMH5

CCDS

This transcript is a member of the Human CCDS set: CCDS8912

Version

ENST00000266980.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000346834 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000266980.4 SLC39A5-003

Summary