Transcript: ENST00000381736.3 NUPL1-001

Description

nucleoporin like 1 [Source:HGNC Symbol;Acc:20261]

Gene Synonyms

KIAA0410, PRO2463

Location

Chromosome 13: 25,875,662-25,916,544 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 13 domains and features, is associated with 18913 variant alleles and maps to 706 oligo probes.

Gene

This transcript is a product of gene ENSG00000139496.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000463407.1	NUPL1-005	6360	485aa	ENSP00000418555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BVL2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381736.3	NUPL1-001	4322	599aa	ENSP00000371155.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9314	Q9BVL2	NM_014089.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381718.3	NUPL1-007	2489	587aa	ENSP00000371137.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31949	Q9BVL2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381747.3	NUPL1-009	1659	510aa	ENSP00000371166.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYF2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000394327.2	NUPL1-004	1408	463aa	ENSP00000408147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JRG1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481980.1	NUPL1-010	605	62aa	ENSP00000418341.1	Nonsense mediated decay		F8WCJ8	-	-
ENST00000490231.1	NUPL1-011	563	36aa	ENSP00000418244.1	Nonsense mediated decay		F8WBZ1	-	-
ENST00000465068.1	NUPL1-014	551	128aa	ENSP00000418904.1	Nonsense mediated decay		F8WC35	-	-
ENST00000466694.1	NUPL1-002	1854	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495460.1	NUPL1-006	947	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477876.1	NUPL1-003	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480187.1	NUPL1-012	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460326.1	NUPL1-013	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476553.1	NUPL1-015	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 4,322 bps, Translation length: 599 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BVL2

CCDS

This transcript is a member of the Human CCDS set: CCDS9314

Version

ENST00000381736.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000044228 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000381736.3 NUPL1-001

Summary