Transcript: ENST00000380518.3 COL2A1-001

Description

collagen, type II, alpha 1 [Source:HGNC Symbol;Acc:2200]

Gene Synonyms

ANFH, AOM, COL11A3, SEDC, STL1

Location

Chromosome 12: 48,366,748-48,398,269 reverse strand.

About this transcript

This transcript has 54 exons, is annotated with 48 domains and features, is associated with 16592 variant alleles and maps to 1440 oligo probes.

Gene

This transcript is a product of gene ENSG00000139219.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380518.3	COL2A1-001	5071	1487aa	ENSP00000369889.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41778	P02458	NM_033150.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337299.6	COL2A1-008	4257	1418aa	ENSP00000338213.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8759	P02458	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493991.1	COL2A1-007	3756	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474996.2	COL2A1-002	760	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465743.2	COL2A1-005	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466884.1	COL2A1-004	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546974.1	COL2A1-009	703	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490609.1	COL2A1-003	679	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483376.1	COL2A1-006	641	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 54, Coding exons: 54, Transcript length: 5,071 bps, Translation length: 1,487 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02458

CCDS

This transcript is a member of the Human CCDS set: CCDS41778

Version

ENST00000380518.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000313810 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000380518.3 COL2A1-001

Summary