Transcript: ENST00000535680.1 B4GALNT3-002

Description

beta-1,4-N-acetyl-galactosaminyl transferase 3 [Source:HGNC Symbol;Acc:24137]

Gene Synonyms

B4GalNac-T3, FLJ16224, FLJ40362

Location

About this transcript

This transcript has 7 exons, is associated with 41903 variant alleles and maps to 138 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000266383.5	B4GALNT3-001	5068	998aa	ENSP00000266383.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8504	Q6L9W6	NM_173593.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322843.3	B4GALNT3-008	1926	636aa	ENSP00000322953.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHD9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544638.1	B4GALNT3-007	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535402.1	B4GALNT3-006	4590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535680.1	B4GALNT3-002	729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540836.1	B4GALNT3-005	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 729 bps,

Version

ENST00000535680.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000397865 (version 1)