Transcript: ENST00000266383.5 B4GALNT3-001

Description

beta-1,4-N-acetyl-galactosaminyl transferase 3 [Source:HGNC Symbol;Acc:24137]

Gene Synonyms

B4GalNac-T3, FLJ16224, FLJ40362

Location

About this transcript

This transcript has 20 exons, is annotated with 12 domains and features, is associated with 50887 variant alleles and maps to 718 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000266383.5	B4GALNT3-001	5068	998aa	ENSP00000266383.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8504	Q6L9W6	NM_173593.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322843.3	B4GALNT3-008	1926	636aa	ENSP00000322953.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHD9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544638.1	B4GALNT3-007	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535402.1	B4GALNT3-006	4590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535680.1	B4GALNT3-002	729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540836.1	B4GALNT3-005	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 5,068 bps, Translation length: 998 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6L9W6

CCDS

This transcript is a member of the Human CCDS set: CCDS8504

Version

ENST00000266383.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251406 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.