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Transcript: ENST00000514987.1 NUP54-004

Description

nucleoporin 54kDa [Source:HGNC Symbol;Acc:17359]

Location

Chromosome 4: 77,036,359-77,069,550 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 5 domains and features, is associated with 15300 variant alleles and maps to 361 oligo probes.

Gene

This transcript is a product of gene ENSG00000138750.10 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000264883.3NUP54-0012367507aaENSP00000264883.3
 
Protein coding
CCDS3576E7EUM5 Q53H29 Q7Z3B4
NM_017426.3GENCODE basic
ENST00000342467.6NUP54-2012142291aaENSP00000344052.6
 
Protein coding
Q7Z3B4 -GENCODE basic
ENST00000514987.1NUP54-0041563459aaENSP00000421304.1
 
Protein coding
CCDS63998B4DT35 E7EUM5 -GENCODE basic
ENST00000458189.2NUP54-2021385327aaENSP00000406103.2
 
Protein coding
E7EUM5 -GENCODE basic
ENST00000514901.1NUP54-009500158aaENSP00000421932.1
 
Protein coding
D6RAH0 -CDS 3' incomplete
ENST00000507257.1NUP54-0021938102aaENSP00000425243.1
 
Nonsense mediated decay
D6RBF7 --
ENST00000502850.1NUP54-0031604138aaENSP00000426609.1
 
Nonsense mediated decay
D6RFI8 --
ENST00000512151.1NUP54-0051385102aaENSP00000424172.1
 
Nonsense mediated decay
D6RBF7 --
ENST00000513352.1NUP54-01057984aaENSP00000424389.1
 
Nonsense mediated decay
D6RB65 --
ENST00000515460.1NUP54-008849No protein-
 
Processed transcript
---
ENST00000508465.1NUP54-017744No protein-
 
Processed transcript
---
ENST00000514307.1NUP54-011566No protein-
 
Processed transcript
---
ENST00000506098.1NUP54-013548No protein-
 
Processed transcript
---
ENST00000508583.1NUP54-007521No protein-
 
Processed transcript
---
ENST00000510569.1NUP54-014494No protein-
 
Processed transcript
---
ENST00000510884.1NUP54-012441No protein-
 
Processed transcript
---
ENST00000508604.1NUP54-0061671No protein-
 
Retained intron
---
ENST00000514313.1NUP54-015537No protein-
 
Retained intron
---
ENST00000513248.1NUP54-018531No protein-
 
Retained intron
---
ENST00000504173.1NUP54-016314No protein-
 
Retained intron
---

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,563 bps, Translation length: 459 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS63998

Version

ENST00000514987.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000362699 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.