Transcript: ENST00000264344.5 FAM13A-022

Description

family with sequence similarity 13, member A [Source:HGNC Symbol;Acc:19367]

Gene Synonyms

ARHGAP48, FAM13A1, KIAA0914

Location

Chromosome 4: 89,647,106-89,978,323 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 16 domains and features, is associated with 135116 variant alleles and maps to 922 oligo probes.

Gene

This transcript is a product of gene ENSG00000138640.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264344.5	FAM13A-022	5858	1023aa	ENSP00000264344.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34029	B4DPB4 O94988	NM_014883.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395002.2	FAM13A-001	4945	669aa	ENSP00000378450.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58913	B4DPB4 O94988	NM_001265579.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511976.1	FAM13A-023	3579	609aa	ENSP00000421914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DPB4 E9PGM7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503556.1	FAM13A-006	3386	683aa	ENSP00000427189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58912	B4DPB4 D6RD35 O94988	NM_001265578.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508369.1	FAM13A-024	3169	697aa	ENSP00000421562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43251	B4DPB4 O94988	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509094.1	FAM13A-004	2762	277aa	ENSP00000426517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFM4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513837.1	FAM13A-005	2590	669aa	ENSP00000423252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58911	B4DPB4 O94988	NM_001265580.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515600.1	FAM13A-010	2206	202aa	ENSP00000422345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6P521	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506913.1	FAM13A-013	581	129aa	ENSP00000421269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGE4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504836.1	FAM13A-002	2287	186aa	ENSP00000427077.1	Nonsense mediated decay		D6RD35	-	-
ENST00000512339.1	FAM13A-012	1511	150aa	ENSP00000423800.1	Nonsense mediated decay		D6RCC1	-	-
ENST00000507352.1	FAM13A-007	1306	163aa	ENSP00000425784.1	Nonsense mediated decay		D6RIY4	-	-
ENST00000502459.1	FAM13A-011	1993	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511145.1	FAM13A-014	743	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506433.1	FAM13A-020	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511573.1	FAM13A-003	3442	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509478.1	FAM13A-009	2286	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508360.1	FAM13A-017	1030	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504229.1	FAM13A-018	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502811.1	FAM13A-021	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502914.1	FAM13A-015	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515155.1	FAM13A-016	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511623.1	FAM13A-019	245	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 5,858 bps, Translation length: 1,023 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94988

CCDS

This transcript is a member of the Human CCDS set: CCDS34029

Version

ENST00000264344.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000363371 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000264344.5 FAM13A-022

Summary